Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q2K619)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q2K619) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2K619
- Type
- protein
- Length
- 685 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6C482d01F32F98784942cF1f954fA8aEba65C2c1
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q2K619
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 63% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 685 | 63% helix, 1% strand | Q2K619 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 766 | 0.72 | 0.78 | 64 | empty |
| 2 | 489 | 0.69 | 0.80 | 53 | empty |
| 3 | 235 | 0.54 | 0.77 | 34 | empty |
| 4 | 110 | 0.37 | 0.74 | 16 | empty |
| 5 | 81 | 0.34 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2K619
- Elsewhere: UniProt Q2K619 · AlphaFold DB Q2K619
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