Research workbench

AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P26480)

Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P26480) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P26480
Type: protein
Length: 617 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x1B9Be4d3bCB04cc5b127c63c2Fbac7783eAB9839
Molecule: RNA polymerase sigma factor rpod
UniProt: P26480
Pockets: 5 · best druggability 0.70

Structure

1 distinct chain · 66% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	617	66% helix, 2% strand	P26480

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	478	0.70	0.80	43	empty
2	567	0.64	0.75	45	empty
3	64	0.41	0.80	17	empty
4	76	0.36	0.76	18	empty
5	76	0.36	0.75	13	empty

Compared structures

7XYA · The cryo-EM structure of an alpa-loading complex · an experimental structure of the same protein · chain A against F, TM-score 0.47
7XYA · The cryo-EM structure of an AlpA-loading complex · an experimental structure of the same protein · chain A against F, TM-score 0.47

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P26480
Elsewhere: UniProt P26480 · AlphaFold DB P26480

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