Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P17531)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P17531) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P17531
- Type
- protein
- Length
- 708 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P17531
- Pockets
- 7 · best druggability 0.75
Structure
1 distinct chain · 62% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 708 | 62% helix, 1% strand | P17531 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 586 | 0.75 | 0.82 | 57 | empty |
| 2 | 241 | 0.52 | 0.76 | 28 | empty |
| 3 | 85 | 0.47 | 0.82 | 18 | empty |
| 4 | 158 | 0.44 | 0.75 | 28 | empty |
| 5 | 96 | 0.38 | 0.75 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P17531
- Elsewhere: UniProt P17531 · AlphaFold DB P17531
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