Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9ZMY3)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q9ZMY3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9ZMY3
- Type
- protein
- Length
- 681 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x55f3944429C2C64Ac722744a98877eb19D370D5D
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q9ZMY3
- Pockets
- 7 · best druggability 0.69
Structure
1 distinct chain · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 681 | 64% helix, 1% strand | Q9ZMY3 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 616 | 0.69 | 0.78 | 67 | empty |
| 2 | 402 | 0.61 | 0.76 | 43 | empty |
| 3 | 138 | 0.43 | 0.75 | 19 | empty |
| 4 | 125 | 0.42 | 0.75 | 14 | empty |
| 5 | 56 | 0.32 | 0.76 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ZMY3
- Elsewhere: UniProt Q9ZMY3 · AlphaFold DB Q9ZMY3
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