Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P43766)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P43766) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P43766
- Type
- protein
- Length
- 629 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P43766
- Pockets
- 5 · best druggability 0.74
Structure
1 distinct chain · 67% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 629 | 67% helix, 2% strand | P43766 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 692 | 0.74 | 0.79 | 65 | empty |
| 2 | 470 | 0.58 | 0.74 | 44 | empty |
| 3 | 165 | 0.55 | 0.80 | 22 | empty |
| 4 | 90 | 0.36 | 0.74 | 15 | empty |
| 5 | 87 | 0.33 | 0.74 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P43766
- Elsewhere: UniProt P43766 · AlphaFold DB P43766
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