Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q83BB6)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (Q83BB6) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q83BB6
- Type
- protein
- Length
- 698 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf18fe12B070cdC0C52a8561c9578bA09cAa78F5F
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- Q83BB6
- Pockets
- 5 · best druggability 0.79
Structure
1 distinct chain · 58% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 698 | 58% helix, 2% strand | Q83BB6 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1069 | 0.79 | 0.81 | 95 | empty |
| 2 | 66 | 0.38 | 0.79 | 11 | empty |
| 3 | 103 | 0.36 | 0.74 | 20 | empty |
| 4 | 76 | 0.34 | 0.74 | 14 | empty |
| 5 | 53 | 0.29 | 0.75 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83BB6
- Elsewhere: UniProt Q83BB6 · AlphaFold DB Q83BB6
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