Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P57163)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor rpod (P57163) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P57163
- Type
- protein
- Length
- 612 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x661f92Fc5950020C7aB410B5F5b9a3f429F49Ae5
- Molecule
- RNA polymerase sigma factor rpod
- UniProt
- P57163
- Pockets
- 7 · best druggability 0.70
Structure
1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma factor rpod | protein | 612 | 66% helix, 2% strand | P57163 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 579 | 0.70 | 0.79 | 44 | empty |
| 2 | 140 | 0.47 | 0.77 | 18 | empty |
| 3 | 53 | 0.40 | 0.81 | 15 | empty |
| 4 | 97 | 0.38 | 0.75 | 12 | empty |
| 5 | 74 | 0.34 | 0.76 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P57163
- Elsewhere: UniProt P57163 · AlphaFold DB P57163
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