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AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (Q72HM6)

Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta'… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q72HM6
Type: protein
Length: 1,524 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xc2d018C3B68758051786C757a4402031fe683775
Molecule: DNA-directed RNA polymerase subunit beta'
UniProt: Q72HM6
Pockets: 16 · best druggability 0.74

Structure

1 distinct chain · 37% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA-directed RNA polymerase subunit beta'	protein	1524	37% helix, 24% strand	Q72HM6

Pockets

16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	840	0.74	0.78	81	empty
2	979	0.70	0.75	61	empty
3	775	0.69	0.76	54	empty
4	508	0.69	0.78	34	empty
5	604	0.68	0.77	59	empty

Compared structures

6CUU · Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic… · an experimental structure of the same protein · chain A against D, TM-score 0.95
6CUU · Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic… · an experimental structure of the same protein · chain A against D, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q72HM6
Elsewhere: UniProt Q72HM6 · AlphaFold DB Q72HM6

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