Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (Q88QP1)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta'… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q88QP1
- Type
- protein
- Length
- 1,399 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x465a21AB2C8618b1A0e34CD90f363a22090D6c25
- Molecule
- DNA-directed RNA polymerase subunit beta'
- UniProt
- Q88QP1
- Pockets
- 15 · best druggability 0.79
Structure
1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit beta' | protein | 1399 | 40% helix, 20% strand | Q88QP1 |
Pockets
15 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 928 | 0.79 | 0.81 | 84 | empty |
| 2 | 987 | 0.73 | 0.77 | 70 | empty |
| 3 | 955 | 0.71 | 0.75 | 53 | empty |
| 4 | 598 | 0.69 | 0.77 | 39 | empty |
| 5 | 523 | 0.65 | 0.76 | 42 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88QP1
- Elsewhere: UniProt Q88QP1 · AlphaFold DB Q88QP1
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