Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta'' (P12465)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P12465
- Type
- protein
- Length
- 1,562 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x12036AF92D04543C69d73C1E0B95D813ddc5bfa1
- Molecule
- DNA-directed RNA polymerase subunit beta''
- UniProt
- P12465
- Pockets
- 14 · best druggability 0.79
Structure
1 distinct chain · 24% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit beta'' | protein | 1562 | 24% helix, 14% strand | P12465 |
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 828 | 0.79 | 0.82 | 89 | empty |
| 2 | 261 | 0.75 | 0.88 | 40 | empty |
| 3 | 303 | 0.53 | 0.74 | 24 | empty |
| 4 | 66 | 0.53 | 0.86 | 19 | empty |
| 5 | 244 | 0.51 | 0.75 | 33 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12465
- Elsewhere: UniProt P12465 · AlphaFold DB P12465
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