Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta'' (Q8MA10)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8MA10
- Type
- protein
- Length
- 1,373 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- DNA-directed RNA polymerase subunit beta''
- UniProt
- Q8MA10
- Pockets
- 20 · best druggability 0.79
Structure
1 distinct chain · 26% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit beta'' | protein | 1373 | 26% helix, 23% strand | Q8MA10 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 576 | 0.79 | 0.85 | 65 | empty |
| 2 | 800 | 0.78 | 0.82 | 78 | empty |
| 3 | 350 | 0.76 | 0.86 | 50 | empty |
| 4 | 118 | 0.68 | 0.90 | 24 | empty |
| 5 | 376 | 0.64 | 0.78 | 35 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8MA10
- Elsewhere: UniProt Q8MA10 · AlphaFold DB Q8MA10
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