Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (B0YPL9)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta'… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0YPL9
- Type
- protein
- Length
- 699 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- DNA-directed RNA polymerase subunit beta'
- UniProt
- B0YPL9
- Pockets
- 8 · best druggability 0.60
Structure
1 distinct chain · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit beta' | protein | 699 | 43% helix, 16% strand | B0YPL9 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.60 | 0.76 | 36 | empty |
| 2 | 112 | 0.45 | 0.78 | 20 | empty |
| 3 | 138 | 0.41 | 0.75 | 20 | empty |
| 4 | 76 | 0.40 | 0.79 | 16 | empty |
| 5 | 50 | 0.38 | 0.81 | 13 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0YPL9
- Elsewhere: UniProt B0YPL9 · AlphaFold DB B0YPL9
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