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AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (Q2NZX8)

Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q2NZX8
Type: protein
Length: 1,383 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x934953E3d9faD9B1cC752f4A28d5f4E6903eA0Ce
Molecule: DNA-directed RNA polymerase subunit beta
UniProt: Q2NZX8
Pockets: 16 · best druggability 0.79

Structure

1 distinct chain · 34% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA-directed RNA polymerase subunit beta	protein	1383	34% helix, 25% strand	Q2NZX8

Pockets

16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	929	0.79	0.81	85	empty
2	608	0.71	0.79	47	empty
3	53	0.68	0.97	16	empty
4	489	0.65	0.77	54	empty
5	355	0.60	0.77	50	empty

Compared structures

6J9F · Cryo-EM structure of xanthomonos oryzae transcription elongation complex with the… · an experimental structure of the same protein · chain A against C, TM-score 0.92
6J9F · Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the… · an experimental structure of the same protein · chain A against C, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2NZX8
Elsewhere: UniProt Q2NZX8 · AlphaFold DB Q2NZX8

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