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AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P06271)

Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P06271
Type: protein
Length: 1,070 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xFda0282803B73212Cec03af81417C0da4EFCa5E1
Molecule: DNA-directed RNA polymerase subunit beta
UniProt: P06271
Pockets: 16 · best druggability 0.71

Structure

1 distinct chain · 31% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA-directed RNA polymerase subunit beta	protein	1070	31% helix, 27% strand	P06271

Pockets

16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	481	0.71	0.81	48	empty
2	517	0.68	0.78	47	empty
3	283	0.63	0.80	29	empty
4	102	0.54	0.83	22	empty
5	74	0.53	0.85	23	empty

Compared structures

8WA1 · The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC2 · an experimental structure of the same protein · chain A against B, TM-score 0.90
8WA0 · The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1 · an experimental structure of the same protein · chain A against B, TM-score 0.87
8W9Z · The cryo-EM structure of the Nicotiana tabacum PEP-PAP · an experimental structure of the same protein · chain A against B, TM-score 0.82

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06271
Elsewhere: UniProt P06271 · AlphaFold DB P06271

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