Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase II subunit RPB2 (Q6FLD5)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase II subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6FLD5
- Type
- protein
- Length
- 1,223 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- DNA-directed RNA polymerase II subunit RPB2
- UniProt
- Q6FLD5
- Pockets
- 17 · best druggability 0.79
Structure
1 distinct chain · 29% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase II subunit RPB2 | protein | 1223 | 29% helix, 24% strand | Q6FLD5 |
Pockets
17 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 975 | 0.79 | 0.80 | 98 | empty |
| 2 | 236 | 0.61 | 0.81 | 30 | empty |
| 3 | 177 | 0.57 | 0.81 | 25 | empty |
| 4 | 275 | 0.55 | 0.76 | 46 | empty |
| 5 | 250 | 0.51 | 0.75 | 32 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6FLD5
- Elsewhere: UniProt Q6FLD5 · AlphaFold DB Q6FLD5
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