Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit RPA43 (O43036)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O43036
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xcAef3C9C92b17a39121e7c4f847C9d185A4A2A15
- Molecule
- DNA-directed RNA polymerase I subunit RPA43
- UniProt
- O43036
- Pockets
- 1 · best druggability 0.28
Structure
1 distinct chain · 10% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase I subunit RPA43 | protein | 173 | 10% helix, 49% strand | O43036 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.28 | 0.73 | 14 | empty |
Compared structures
- 7AOE · Schizosaccharomyces pombe RNA polymerase I (elongation complex) · an experimental structure of the same protein · chain A against G, TM-score 0.82
- 7AOE · Schizosaccharomyces pombe RNA polymerase I (elongation complex) · an experimental structure of the same protein · chain A against G, TM-score 0.82
- 7AOC · Schizosaccharomyces pombe RNA polymerase I (monomer) · an experimental structure of the same protein · chain A against G, TM-score 0.78
- 7AOC · Schizosaccharomyces pombe RNA polymerase I (monomer) · an experimental structure of the same protein · chain A against G, TM-score 0.78
- 7AOD · Schizosaccharomyces pombe RNA polymerase I (dimer) · an experimental structure of the same protein · chain A against S, TM-score 0.78
- 7AOD · Schizosaccharomyces pombe RNA polymerase I (dimer) · an experimental structure of the same protein · chain A against G, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43036
- Elsewhere: UniProt O43036 · AlphaFold DB O43036
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