Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit RPA2 (Q54BM1)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q54BM1
- Type
- protein
- Length
- 1,130 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x12036AF92D04543C69d73C1E0B95D813ddc5bfa1
- Molecule
- DNA-directed RNA polymerase I subunit RPA2
- UniProt
- Q54BM1
- Pockets
- 14 · best druggability 0.82
Structure
1 distinct chain · 31% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase I subunit RPA2 | protein | 1130 | 31% helix, 25% strand | Q54BM1 |
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 767 | 0.82 | 0.85 | 71 | empty |
| 2 | 65 | 0.72 | 0.98 | 22 | empty |
| 3 | 467 | 0.68 | 0.79 | 37 | empty |
| 4 | 260 | 0.67 | 0.83 | 28 | empty |
| 5 | 83 | 0.61 | 0.89 | 22 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q54BM1
- Elsewhere: UniProt Q54BM1 · AlphaFold DB Q54BM1
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