Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit RPA1 (P28363)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase I subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P28363
- Type
- protein
- Length
- 638 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8D2e4Aa2bf04A7561b24Ce08Ad813be6bD22A2B0
- Molecule
- DNA-directed RNA polymerase I subunit RPA1
- UniProt
- P28363
- Pockets
- 9 · best druggability 0.62
Structure
1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase I subunit RPA1 | protein | 638 | 46% helix, 14% strand | P28363 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 321 | 0.62 | 0.78 | 32 | empty |
| 2 | 147 | 0.56 | 0.82 | 30 | empty |
| 3 | 147 | 0.53 | 0.80 | 25 | empty |
| 4 | 215 | 0.48 | 0.75 | 25 | empty |
| 5 | 98 | 0.46 | 0.80 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28363
- Elsewhere: UniProt P28363 · AlphaFold DB P28363
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