Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma-54 factor 2 (P30333)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma-54 factor 2 (P30333) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P30333
- Type
- protein
- Length
- 537 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- RNA polymerase sigma-54 factor 2
- UniProt
- P30333
- Pockets
- 5 · best druggability 0.58
Structure
1 distinct chain · 52% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma-54 factor 2 | protein | 537 | 52% helix, 6% strand | P30333 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.58 | 0.82 | 29 | empty |
| 2 | 89 | 0.55 | 0.85 | 15 | empty |
| 3 | 81 | 0.33 | 0.74 | 15 | empty |
| 4 | 53 | 0.31 | 0.76 | 12 | empty |
| 5 | 53 | 0.27 | 0.75 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30333
- Elsewhere: UniProt P30333 · AlphaFold DB P30333
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