Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase sigma-54 factor (P08623)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase sigma-54 factor (P08623) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P08623
- Type
- protein
- Length
- 502 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4bC225Cd2778aD8b434c09FeFE8BcBb702fea729
- Molecule
- RNA polymerase sigma-54 factor
- UniProt
- P08623
- Pockets
- 3 · best druggability 0.46
Structure
1 distinct chain · 46% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase sigma-54 factor | protein | 502 | 46% helix, 8% strand | P08623 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.46 | 0.77 | 15 | empty |
| 2 | 68 | 0.32 | 0.75 | 14 | empty |
| 3 | 52 | 0.28 | 0.74 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08623
- Elsewhere: UniProt P08623 · AlphaFold DB P08623
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