Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L16 3-hydroxylase (P27431)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L16 3-hydroxylase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P27431
- Type
- protein
- Length
- 373 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- 50S ribosomal protein L16 3-hydroxylase
- UniProt
- P27431
- Pockets
- 2 · best druggability 0.71
Structure
1 distinct chain · 30% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L16 3-hydroxylase | protein | 373 | 30% helix, 26% strand | P27431 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.71 | 0.88 | 30 | empty |
| 2 | 218 | 0.65 | 0.84 | 33 | empty |
Compared structures
- 4CCL · X-Ray structure of E. coli ycfD · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 4CCL · X-ray structure of E. COLI ycfd · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 4NUB · Crystal structure of escherichia COLI ribosomal oxygenase ycfd · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4NUB · Crystal structure of Escherichia coli ribosomal oxygenase YcfD · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4LIT · Structure of ycfd a ribosomal oxygenase from escherichia COLI in complex with cobalt and… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4LIT · Structure of YcfD a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4LIV · Structure of ycfd, a ribosomal oxygenase from escherichia COLI in complex with cobalt and… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4LIV · Structure of YcfD, a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4LIU · Structure of YcfD, a Ribosomal oxygenase from Escherichia coli. · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 4LIU · Structure of ycfd, a ribosomal oxygenase from escherichia COLI. · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27431
- Elsewhere: UniProt P27431 · AlphaFold DB P27431
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