Research workbench
AlphaFold monomer V2.0 prediction for 54S ribosomal protein L35, mitochondrial (Q06678)
Analyse AlphaFold monomer V2.0 prediction for 54S ribosomal protein L35, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q06678
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4853f9898b53fc29D97B211C87020A0c7A65b1A8
- Molecule
- 54S ribosomal protein L35, mitochondrial
- UniProt
- Q06678
- Pockets
- 5 · best druggability 0.53
Structure
1 distinct chain · 30% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 54S ribosomal protein L35, mitochondrial | protein | 367 | 30% helix, 19% strand | Q06678 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.53 | 0.80 | 22 | empty |
| 2 | 124 | 0.47 | 0.79 | 23 | empty |
| 3 | 152 | 0.45 | 0.75 | 21 | empty |
| 4 | 55 | 0.36 | 0.79 | 12 | empty |
| 5 | 56 | 0.26 | 0.73 | 13 | empty |
Compared structures
- 5MRE · Structure of the yeast mitochondrial ribosome - Class B · an experimental structure of the same protein · chain A against 1, TM-score 0.95
- 5MRF · Structure of the yeast mitochondrial ribosome - Class C · an experimental structure of the same protein · chain A against 1, TM-score 0.95
- 5MRC · Structure of the yeast mitochondrial ribosome - Class A · an experimental structure of the same protein · chain A against 1, TM-score 0.95
- 3J6B · Structure of the yeast mitochondrial large ribosomal subunit · an experimental structure of the same protein · chain A against 1, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06678
- Elsewhere: UniProt Q06678 · AlphaFold DB Q06678
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