Research workbench
AlphaFold monomer V2.0 prediction for 54S ribosomal protein L2, mitochondrial (P12687)
Analyse AlphaFold monomer V2.0 prediction for 54S ribosomal protein L2, mitochondrial… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P12687
- Type
- protein
- Length
- 371 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8fCa577425962E967D175b7cf864132866e2F7F9
- Molecule
- 54S ribosomal protein L2, mitochondrial
- UniProt
- P12687
- Pockets
- 2 · best druggability 0.51
Structure
1 distinct chain · 40% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 54S ribosomal protein L2, mitochondrial | protein | 371 | 40% helix, 14% strand | P12687 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.51 | 0.77 | 31 | empty |
| 2 | 79 | 0.40 | 0.78 | 16 | empty |
Compared structures
- 5MRE · Structure of the yeast mitochondrial ribosome - Class B · an experimental structure of the same protein · chain A against R, TM-score 0.87
- 5MRC · Structure of the yeast mitochondrial ribosome - Class A · an experimental structure of the same protein · chain A against R, TM-score 0.87
- 5MRF · Structure of the yeast mitochondrial ribosome - Class C · an experimental structure of the same protein · chain A against R, TM-score 0.87
- 3J6B · Structure of the yeast mitochondrial large ribosomal subunit · an experimental structure of the same protein · chain A against R, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12687
- Elsewhere: UniProt P12687 · AlphaFold DB P12687
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