Research workbench
AlphaFold monomer V2.0 prediction for ribosomal large subunit pseudouridine synthase D (P65836)
Analyse AlphaFold monomer V2.0 prediction for ribosomal large subunit pseudouridine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P65836
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Ribosomal large subunit pseudouridine synthase D
- UniProt
- P65836
- Pockets
- 4 · best druggability 0.66
Structure
1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal large subunit pseudouridine synthase D | protein | 326 | 26% helix, 30% strand | P65836 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.66 | 0.96 | 17 | empty |
| 2 | 261 | 0.49 | 0.74 | 37 | empty |
| 3 | 50 | 0.38 | 0.81 | 17 | empty |
| 4 | 57 | 0.29 | 0.74 | 15 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P65836
- Elsewhere: UniProt P65836 · AlphaFold DB P65836
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