Research workbench
AlphaFold monomer V2.0 prediction for ribosomal large subunit pseudouridine synthase D (Q9K0B0)
Analyse AlphaFold monomer V2.0 prediction for ribosomal large subunit pseudouridine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9K0B0
- Type
- protein
- Length
- 374 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x676cea925913029B25bFd75c68A60e44291ADf58
- Molecule
- Ribosomal large subunit pseudouridine synthase D
- UniProt
- Q9K0B0
- Pockets
- 4 · best druggability 0.72
Structure
1 distinct chain · 25% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal large subunit pseudouridine synthase D | protein | 374 | 25% helix, 25% strand | Q9K0B0 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 583 | 0.72 | 0.80 | 66 | empty |
| 2 | 101 | 0.40 | 0.77 | 20 | empty |
| 3 | 71 | 0.40 | 0.79 | 20 | empty |
| 4 | 63 | 0.28 | 0.74 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K0B0
- Elsewhere: UniProt Q9K0B0 · AlphaFold DB Q9K0B0
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