Research workbench
AlphaFold monomer V2.0 prediction for endolytic peptidoglycan transglycosylase rlpa (Q8ZR01)
Analyse AlphaFold monomer V2.0 prediction for endolytic peptidoglycan transglycosylase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8ZR01
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x46EfCa788d03A3e879DAcDb96552AB8Bbc7e20b3
- Molecule
- Endolytic peptidoglycan transglycosylase rlpa
- UniProt
- Q8ZR01
- Pockets
- 3 · best druggability 0.48
Structure
1 distinct chain · 12% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endolytic peptidoglycan transglycosylase rlpa | protein | 381 | 12% helix, 22% strand | Q8ZR01 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.48 | 0.80 | 19 | empty |
| 2 | 53 | 0.31 | 0.77 | 19 | empty |
| 3 | 50 | 0.26 | 0.74 | 12 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZR01
- Elsewhere: UniProt Q8ZR01 · AlphaFold DB Q8ZR01
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