Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase M (A1JPA5)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1JPA5
- Type
- protein
- Length
- 368 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Ribosomal RNA large subunit methyltransferase M
- UniProt
- A1JPA5
- Pockets
- 4 · best druggability 0.52
Structure
1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase M | protein | 368 | 32% helix, 23% strand | A1JPA5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.52 | 0.79 | 31 | empty |
| 2 | 131 | 0.42 | 0.75 | 18 | empty |
| 3 | 66 | 0.33 | 0.76 | 17 | empty |
| 4 | 56 | 0.28 | 0.74 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1JPA5
- Elsewhere: UniProt A1JPA5 · AlphaFold DB A1JPA5
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