Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase M (Q4KFD4)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q4KFD4
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Ribosomal RNA large subunit methyltransferase M
- UniProt
- Q4KFD4
- Pockets
- 3 · best druggability 0.58
Structure
1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase M | protein | 357 | 34% helix, 25% strand | Q4KFD4 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 276 | 0.58 | 0.78 | 47 | empty |
| 2 | 65 | 0.38 | 0.79 | 15 | empty |
| 3 | 82 | 0.34 | 0.75 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4KFD4
- Elsewhere: UniProt Q4KFD4 · AlphaFold DB Q4KFD4
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