Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase K/L (Q7VP04)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q7VP04
- Type
- protein
- Length
- 712 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7B1Fbdc7c90598A502d8d8d5Dd726e011d0DC455
- Molecule
- Ribosomal RNA large subunit methyltransferase K/L
- UniProt
- Q7VP04
- Pockets
- 8 · best druggability 0.74
Structure
1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase K/L | protein | 712 | 34% helix, 25% strand | Q7VP04 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1138 | 0.74 | 0.77 | 87 | empty |
| 2 | 393 | 0.66 | 0.80 | 42 | empty |
| 3 | 275 | 0.54 | 0.76 | 36 | empty |
| 4 | 262 | 0.53 | 0.75 | 35 | empty |
| 5 | 50 | 0.50 | 0.88 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7VP04
- Elsewhere: UniProt Q7VP04 · AlphaFold DB Q7VP04
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