Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit methyltransferase K/L (A3MYD2)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA large subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A3MYD2
- Type
- protein
- Length
- 712 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x39503d07CAEBE301c26d2951764fa147CEd0a274
- Molecule
- Ribosomal RNA large subunit methyltransferase K/L
- UniProt
- A3MYD2
- Pockets
- 10 · best druggability 0.67
Structure
1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA large subunit methyltransferase K/L | protein | 712 | 34% helix, 25% strand | A3MYD2 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 489 | 0.67 | 0.78 | 55 | empty |
| 2 | 367 | 0.66 | 0.80 | 37 | empty |
| 3 | 243 | 0.58 | 0.79 | 35 | empty |
| 4 | 303 | 0.58 | 0.77 | 36 | empty |
| 5 | 110 | 0.53 | 0.82 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3MYD2
- Elsewhere: UniProt A3MYD2 · AlphaFold DB A3MYD2
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