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AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (Q6LMS7)

Analyse AlphaFold monomer V2.0 prediction for 23S rRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q6LMS7
Type: protein
Length: 466 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x9B9C1843C18E3Db57c90541Af4e30FE5153fE095
Molecule: 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
UniProt: Q6LMS7
Pockets: 3 · best druggability 0.66

Structure

1 distinct chain · 25% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd	protein	466	25% helix, 31% strand	Q6LMS7

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	548	0.66	0.77	64	empty
2	214	0.57	0.79	39	empty
3	80	0.32	0.73	12	empty

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6LMS7
Elsewhere: UniProt Q6LMS7 · AlphaFold DB Q6LMS7

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