Research workbench
AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (F2GA29)
Analyse AlphaFold monomer V2.0 prediction for 23S rRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- F2GA29
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0EA189b2343A464f560b44103f6A3396Da1dA8a9
- Molecule
- 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
- UniProt
- F2GA29
- Pockets
- 3 · best druggability 0.81
Structure
1 distinct chain · 23% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd | protein | 482 | 23% helix, 27% strand | F2GA29 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 974 | 0.81 | 0.83 | 107 | empty |
| 2 | 88 | 0.35 | 0.74 | 16 | empty |
| 3 | 50 | 0.26 | 0.74 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2GA29
- Elsewhere: UniProt F2GA29 · AlphaFold DB F2GA29
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