Research workbench
AlphaFold monomer V2.0 prediction for 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd (B7J921)
Analyse AlphaFold monomer V2.0 prediction for 23S rRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B7J921
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9130a41bCa92dF77878ec5A9328e3D47AA08B359
- Molecule
- 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd
- UniProt
- B7J921
- Pockets
- 3 · best druggability 0.68
Structure
1 distinct chain · 25% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 23S rRNA (URACIL(1939)-C(5))-methyltransferase rlmd | protein | 440 | 25% helix, 31% strand | B7J921 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 602 | 0.68 | 0.78 | 77 | empty |
| 2 | 79 | 0.33 | 0.74 | 15 | empty |
| 3 | 62 | 0.32 | 0.76 | 18 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7J921
- Elsewhere: UniProt B7J921 · AlphaFold DB B7J921
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