Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L3 (Q4JB40)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L3 (Q4JB40) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q4JB40
- Type
- protein
- Length
- 342 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
- Molecule
- 50S ribosomal protein L3
- UniProt
- Q4JB40
- Pockets
- 5 · best druggability 0.37
Structure
1 distinct chain · 16% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L3 | protein | 342 | 16% helix, 31% strand | Q4JB40 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.37 | 0.73 | 19 | empty |
| 2 | 76 | 0.32 | 0.74 | 17 | empty |
| 3 | 62 | 0.30 | 0.74 | 14 | empty |
| 4 | 50 | 0.26 | 0.74 | 12 | empty |
| 5 | 52 | 0.26 | 0.73 | 11 | empty |
Compared structures
- 8HKU · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HL4 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HKV · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HL2 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HL3 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HL1 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.95
- 8HL5 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.94
- 8HKY · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.94
- 8HKZ · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against AL3P, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4JB40
- Elsewhere: UniProt Q4JB40 · AlphaFold DB Q4JB40
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