Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L3 (Q8TZZ8)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L3 (Q8TZZ8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8TZZ8
- Type
- protein
- Length
- 365 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
- Molecule
- 50S ribosomal protein L3
- UniProt
- Q8TZZ8
- Pockets
- 6 · best druggability 0.43
Structure
1 distinct chain · 11% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L3 | protein | 365 | 11% helix, 33% strand | Q8TZZ8 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.43 | 0.75 | 17 | empty |
| 2 | 130 | 0.41 | 0.75 | 24 | empty |
| 3 | 115 | 0.37 | 0.74 | 25 | empty |
| 4 | 85 | 0.36 | 0.75 | 11 | empty |
| 5 | 59 | 0.32 | 0.76 | 16 | empty |
Compared structures
- 4V6U · Promiscuous behavior of proteins in archaeal ribosomes revealed by cryo-EM: implications… · an experimental structure of the same protein · chain A against BC, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8TZZ8
- Elsewhere: UniProt Q8TZZ8 · AlphaFold DB Q8TZZ8
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