Research workbench
AlphaFold monomer V2.0 prediction for 60S ribosomal protein L3 (P39023)
Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal protein L3 (P39023) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39023
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9F605311B7e26e76340423EfAfbE5e2EFc7A0b7C
- Molecule
- 60S ribosomal protein L3
- UniProt
- P39023
- Pockets
- 6 · best druggability 0.38
Structure
1 distinct chain · 18% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 60S ribosomal protein L3 | protein | 403 | 18% helix, 28% strand | P39023 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.38 | 0.75 | 21 | empty |
| 2 | 110 | 0.38 | 0.74 | 22 | empty |
| 3 | 101 | 0.37 | 0.75 | 16 | empty |
| 4 | 95 | 0.36 | 0.74 | 16 | empty |
| 5 | 72 | 0.30 | 0.74 | 16 | empty |
Compared structures
- 8G6J · mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8G5Z · mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8G61 · mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8YOO · Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8G60 · mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8GLP · mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus… · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8OHD · 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8XSX · Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2 · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8OJ0 · 60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8OJ8 · 60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8OJ5 · 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
- 8G5Y · mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) · an experimental structure of the same protein · chain A against LB, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39023
- Elsewhere: UniProt P39023 · AlphaFold DB P39023
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