Research workbench
AlphaFold monomer V2.0 prediction for 60S ribosomal protein L3 (P50880)
Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal protein L3 (P50880) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P50880
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA7381fE9bA15c95992d24BC2A3Bb44aB0Cd83e3f
- Molecule
- 60S ribosomal protein L3
- UniProt
- P50880
- Pockets
- 6 · best druggability 0.40
Structure
1 distinct chain · 19% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 60S ribosomal protein L3 | protein | 401 | 19% helix, 28% strand | P50880 |
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.40 | 0.74 | 17 | empty |
| 2 | 123 | 0.38 | 0.74 | 21 | empty |
| 3 | 113 | 0.38 | 0.74 | 16 | empty |
| 4 | 55 | 0.33 | 0.77 | 13 | empty |
| 5 | 91 | 0.32 | 0.73 | 19 | empty |
Compared structures
- 9BH5 · High-resolution C. elegans 80S ribosome structure - class 1 · an experimental structure of the same protein · chain A against CB, TM-score 0.98
- 9CAI · High-resolution C. elegans 80S ribosome structure - class 1 · an experimental structure of the same protein · chain A against CB, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50880
- Elsewhere: UniProt P50880 · AlphaFold DB P50880
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