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AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (Q5JDH2)

Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (Q5JDH2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q5JDH2
Type: protein
Length: 239 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xb4D2d9c96b0D792d0b77e7147D724cc1F801ae58
Molecule: 50S ribosomal protein L2
UniProt: Q5JDH2
Pockets: 2 · best druggability 0.43

Structure

1 distinct chain · 13% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	50S ribosomal protein L2	protein	239	13% helix, 24% strand	Q5JDH2

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	126	0.43	0.76	24	empty
2	67	0.26	0.72	18	empty

Compared structures

6TH6 · Cryo-EM Structure of T. kodakarensis 70S ribosome · an experimental structure of the same protein · chain A against BC, TM-score 0.96
6SKF · Cryo-EM Structure of T. kodakarensis 70S ribosome · an experimental structure of the same protein · chain A against BC, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5JDH2
Elsewhere: UniProt Q5JDH2 · AlphaFold DB Q5JDH2

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