Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (B7IA36)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L2 (B7IA36) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B7IA36
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa5bBccF395a3ABe9B629B9f9f8fBd173cC6F75b8
- Molecule
- 50S ribosomal protein L2
- UniProt
- B7IA36
- Pockets
- 3 · best druggability 0.50
Structure
1 distinct chain · 10% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L2 | protein | 274 | 10% helix, 29% strand | B7IA36 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.50 | 0.75 | 30 | empty |
| 2 | 57 | 0.31 | 0.76 | 14 | empty |
| 3 | 63 | 0.31 | 0.75 | 16 | empty |
Compared structures
- 7UVZ · A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7UVY · A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4W · A. baumannii Ribosome-Eravacycline complex: Empty 70S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4V · A. baumannii ribosome-eravacycline complex: 50S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4V · A. baumannii Ribosome-Eravacycline complex: 50S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4Y · A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4X · A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7UVV · A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7M4Z · A. baumannii Ribosome-Eravacycline complex: hpf-bound 70S · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7UVW · A. baumannii ribosome: 70S with E-site tRNA · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7UW1 · A. baumannii 70S ribosome-Streptothricin-D complex · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7RYG · A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S · an experimental structure of the same protein · chain A against C, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7IA36
- Elsewhere: UniProt B7IA36 · AlphaFold DB B7IA36
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