Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L17 (Q2FW33)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L17 (Q2FW33) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2FW33
- Type
- protein
- Length
- 122 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x661f92Fc5950020C7aB410B5F5b9a3f429F49Ae5
- Molecule
- 50S ribosomal protein L17
- UniProt
- Q2FW33
- Pockets
- 1 · best druggability 0.26
Structure
1 distinct chain · 48% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L17 | protein | 122 | 48% helix, 21% strand | Q2FW33 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.26 | 0.72 | 8 | empty |
Compared structures
- 8P2G · Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid… · an experimental structure of the same protein · chain A against Q, TM-score 0.97
- 8P2F · Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid… · an experimental structure of the same protein · chain A against Q, TM-score 0.97
- 8P2H · Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with… · an experimental structure of the same protein · chain A against Q, TM-score 0.97
- 7NHL · VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus… · an experimental structure of the same protein · chain A against Q, TM-score 0.97
- 7NHM · 70S ribosome from Staphylococcus aureus · an experimental structure of the same protein · chain A against Q, TM-score 0.97
- 6YEF · 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus · an experimental structure of the same protein · chain A against Q, TM-score 0.96
- 4WF9 · The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex… · an experimental structure of the same protein · chain A against K, TM-score 0.95
- 5NRG · The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex… · an experimental structure of the same protein · chain A against K, TM-score 0.95
- 5NRG · The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex… · an experimental structure of the same protein · chain A against K, TM-score 0.95
- 4WFB · The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex… · an experimental structure of the same protein · chain A against K, TM-score 0.94
- 6SJ6 · Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus · an experimental structure of the same protein · chain A against Q, TM-score 0.94
- 6SJ6 · Cryo-EM structure of 50S-rsfs complex from staphylococcus aureus · an experimental structure of the same protein · chain A against Q, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FW33
- Elsewhere: UniProt Q2FW33 · AlphaFold DB Q2FW33
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