Research workbench
AlphaFold monomer V2.0 prediction for 60S ribosomal protein L17-a (O14339)
Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal protein L17-a (O14339) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O14339
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBeB220F0B5b0C48F46B5DDd3E3b071BC0827f8D6
- Molecule
- 60S ribosomal protein L17-a
- UniProt
- O14339
- Pockets
- 1 · best druggability 0.31
Structure
1 distinct chain · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 60S ribosomal protein L17-a | protein | 187 | 37% helix, 24% strand | O14339 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.31 | 0.75 | 15 | empty |
Compared structures
- 8EUI · Ytm1 associated nascent 60S ribosome (-fkbp39) State 3 · an experimental structure of the same protein · chain A against P, TM-score 0.81
- 9AXV · Translating S. pombe ribosome · an experimental structure of the same protein · chain A against Bb, TM-score 0.81
- 9AXU · Non-translating S. pombe ribosome large subunit · an experimental structure of the same protein · chain A against b, TM-score 0.80
- 9AXT · Non-translating S. pombe ribosome · an experimental structure of the same protein · chain A against Bb, TM-score 0.80
- 8EUG · Ytm1 associated nascent 60S ribosome State 3 · an experimental structure of the same protein · chain A against P, TM-score 0.80
- 8ETC · Fkbp39 associated nascent 60S ribosome State 4 · an experimental structure of the same protein · chain A against P, TM-score 0.78
- 8EV3 · Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B · an experimental structure of the same protein · chain A against P, TM-score 0.75
- 8EUY · Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A · an experimental structure of the same protein · chain A against P, TM-score 0.74
- 8ETI · Fkbp39 associated 60S nascent ribosome State 1 · an experimental structure of the same protein · chain A against P, TM-score 0.74
- 8ESQ · Ytm1 associated nascent 60S ribosome State 2 · an experimental structure of the same protein · chain A against P, TM-score 0.73
- 8ETJ · Fkbp39 associated 60S nascent ribosome State 2 · an experimental structure of the same protein · chain A against P, TM-score 0.72
- 8ETG · Fkbp39 associated 60S nascent ribosome State 3 · an experimental structure of the same protein · chain A against P, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O14339
- Elsewhere: UniProt O14339 · AlphaFold DB O14339
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