Research workbench
AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13 (P39473)
Analyse AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13 (P39473) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P39473
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x079259f5Fd4eeDe65D1d953dAFA16Bf9e3204575
- Molecule
- 50S ribosomal protein L13
- UniProt
- P39473
- Pockets
- 1 · best druggability 0.37
Structure
1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L13 | protein | 148 | 46% helix, 16% strand | P39473 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.37 | 0.76 | 17 | empty |
Compared structures
- 8HKU · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.84
- 8HL2 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.83
- 8HL3 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.83
- 8HKV · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.83
- 8HL4 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.82
- 8HL1 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.82
- 8HL5 · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.80
- 8HKZ · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.78
- 8HKY · Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome · an experimental structure of the same protein · chain A against L13P, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39473
- Elsewhere: UniProt P39473 · AlphaFold DB P39473
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