Research workbench
AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13 (P47963)
Analyse AlphaFold monomer V2.0 prediction for 60S ribosomal protein L13 (P47963) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P47963
- Type
- protein
- Length
- 211 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71112d4fF7ebb3b617963c05f052289e073082FD
- Molecule
- 60S ribosomal protein L13
- UniProt
- P47963
- Pockets
- 2 · best druggability 0.54
Structure
1 distinct chain · 43% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 60S ribosomal protein L13 | protein | 211 | 43% helix, 5% strand | P47963 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.54 | 0.77 | 23 | empty |
| 2 | 59 | 0.26 | 0.73 | 14 | empty |
Compared structures
- 7LS1 · 80S ribosome from mouse bound to eEF2 (Class II) · an experimental structure of the same protein · chain A against F1, TM-score 0.96
- 7LS2 · 80S ribosome from mouse bound to eEF2 (Class I) · an experimental structure of the same protein · chain A against F1, TM-score 0.96
- 7CPV · Cryo-EM structure of 80S ribosome from mouse testis · an experimental structure of the same protein · chain A against LL, TM-score 0.96
- 7CPU · Cryo-EM structure of 80S ribosome from mouse kidney · an experimental structure of the same protein · chain A against LL, TM-score 0.96
- 6SWA · Mus musculus brain neocortex ribosome 60S bound to Ebp1 · an experimental structure of the same protein · chain A against K, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P47963
- Elsewhere: UniProt P47963 · AlphaFold DB P47963
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