Research workbench
AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase rkp (Q9SIZ8)
Analyse AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase rkp (Q9SIZ8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9SIZ8
- Type
- protein
- Length
- 1,280 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6DAA77C4263E74E745cA9c4D8E291e57e8991Cf5
- Molecule
- E3 ubiquitin-protein ligase rkp
- UniProt
- Q9SIZ8
- Pockets
- 16 · best druggability 0.81
Structure
1 distinct chain · 49% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase rkp | protein | 1280 | 49% helix, 9% strand | Q9SIZ8 |
Pockets
16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1117 | 0.81 | 0.82 | 108 | empty |
| 2 | 1152 | 0.79 | 0.80 | 117 | empty |
| 3 | 213 | 0.61 | 0.82 | 39 | empty |
| 4 | 145 | 0.59 | 0.83 | 21 | empty |
| 5 | 190 | 0.53 | 0.78 | 29 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SIZ8
- Elsewhere: UniProt Q9SIZ8 · AlphaFold DB Q9SIZ8
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