Research workbench
AlphaFold monomer V2.0 prediction for ribonucleoside-diphosphate reductase subunit beta (O84835)
Analyse AlphaFold monomer V2.0 prediction for ribonucleoside-diphosphate reductase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O84835
- Type
- protein
- Length
- 346 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd6bC1C645b7B141A4643641CCE4f692185f8f8FC
- Molecule
- Ribonucleoside-diphosphate reductase subunit beta
- UniProt
- O84835
- Pockets
- 2 · best druggability 0.47
Structure
1 distinct chain · 73% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonucleoside-diphosphate reductase subunit beta | protein | 346 | 73% helix, 1% strand | O84835 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.47 | 0.79 | 18 | empty |
| 2 | 66 | 0.34 | 0.76 | 15 | empty |
Compared structures
- 4M1H · X-ray crystal structure of Chlamydia trachomatis apo NrdB · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 4M1H · X-ray crystal structure of chlamydia trachomatis apo nrdb · an experimental structure of the same protein · chain A against B, TM-score 0.93
- 4M1I · X-ray crystal structure of Chlamydia trachomatis Mn(II)Fe(II)-NrdB · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4M1I · X-ray crystal structure of chlamydia trachomatis MN(II)FE(II)-nrdb · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4D8F · Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 1 - high Mn) · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 4D8F · Chlamydia trachomatis nrdb with a MN/FE cofactor (procedure 1 - high mn) · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 4D8G · Chlamydia trachomatis nrdb with a MN/FE cofactor (procedure 2 - low mn) · an experimental structure of the same protein · chain A against D, TM-score 0.93
- 4D8G · Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 2 - low Mn) · an experimental structure of the same protein · chain A against D, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O84835
- Elsewhere: UniProt O84835 · AlphaFold DB O84835
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