Research workbench
AlphaFold monomer V2.0 prediction for synembryn-B (Q80ZG0)
Analyse AlphaFold monomer V2.0 prediction for synembryn-B (Q80ZG0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q80ZG0
- Type
- protein
- Length
- 520 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0E31920A67aafd5e006BeA2a197680e7C7330186
- Molecule
- Synembryn-B
- UniProt
- Q80ZG0
- Pockets
- 6 · best druggability 0.61
Structure
1 distinct chain · 66% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Synembryn-B | protein | 520 | 66% helix, 3% strand | Q80ZG0 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 397 | 0.61 | 0.77 | 47 | empty |
| 2 | 68 | 0.57 | 0.88 | 22 | empty |
| 3 | 161 | 0.49 | 0.77 | 24 | empty |
| 4 | 109 | 0.40 | 0.76 | 20 | empty |
| 5 | 89 | 0.34 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80ZG0
- Elsewhere: UniProt Q80ZG0 · AlphaFold DB Q80ZG0
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