Research workbench
AlphaFold monomer V2.0 prediction for 2-keto-3-deoxy-L-rhamnonate aldolase (P76469)
Analyse AlphaFold monomer V2.0 prediction for 2-keto-3-deoxy-L-rhamnonate aldolase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P76469
- Type
- protein
- Length
- 267 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB05a6C07895e32B47A59E248baa07d66d77b0e17
- Molecule
- 2-keto-3-deoxy-L-rhamnonate aldolase
- UniProt
- P76469
- Pockets
- 2 · best druggability 0.54
Structure
1 distinct chain · 45% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-keto-3-deoxy-L-rhamnonate aldolase | protein | 267 | 45% helix, 15% strand | P76469 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.54 | 0.83 | 25 | empty |
| 2 | 56 | 0.29 | 0.75 | 18 | empty |
Compared structures
- 2VWT · Crystal structure of yfau, a metal ion dependent class II aldolase from escherichia COLI… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2VWT · Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2VWS · Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 2VWS · Crystal structure of yfau, a metal ion dependent class II aldolase from escherichia COLI… · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76469
- Elsewhere: UniProt P76469 · AlphaFold DB P76469
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