Research workbench
AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase (Q8RJP2)
Analyse AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase (Q8RJP2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8RJP2
- Type
- protein
- Length
- 578 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x54845eE8b01D7512f3AfFaC0fa1a19a5Bcac5CB8
- Molecule
- Rhamnogalacturonate lyase
- UniProt
- Q8RJP2
- Pockets
- 6 · best druggability 0.59
Structure
1 distinct chain · 6% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhamnogalacturonate lyase | protein | 578 | 6% helix, 45% strand | Q8RJP2 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 216 | 0.59 | 0.80 | 29 | empty |
| 2 | 269 | 0.56 | 0.77 | 30 | empty |
| 3 | 122 | 0.52 | 0.81 | 19 | empty |
| 4 | 81 | 0.42 | 0.79 | 22 | empty |
| 5 | 148 | 0.40 | 0.74 | 23 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RJP2
- Elsewhere: UniProt Q8RJP2 · AlphaFold DB Q8RJP2
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