Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonase B (B0Y0Q3)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonase B (B0Y0Q3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0Y0Q3
- Type
- protein
- Length
- 521 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xca0994581703679AaE6614F91C3dB368c35c7353
- Molecule
- Probable rhamnogalacturonase B
- UniProt
- B0Y0Q3
- Pockets
- 4 · best druggability 0.59
Structure
1 distinct chain · 7% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonase B | protein | 521 | 7% helix, 40% strand | B0Y0Q3 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.59 | 0.79 | 33 | empty |
| 2 | 274 | 0.54 | 0.76 | 39 | empty |
| 3 | 144 | 0.49 | 0.79 | 36 | empty |
| 4 | 107 | 0.35 | 0.73 | 24 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0Y0Q3
- Elsewhere: UniProt B0Y0Q3 · AlphaFold DB B0Y0Q3
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