Research workbench
AlphaFold monomer V2.0 prediction for inactive rhomboid protein 1 (Q6GMF8)
Analyse AlphaFold monomer V2.0 prediction for inactive rhomboid protein 1 (Q6GMF8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6GMF8
- Type
- protein
- Length
- 857 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbb2F1C7CB3A1eeFAc24fCa72cc627162D5413FD7
- Molecule
- Inactive rhomboid protein 1
- UniProt
- Q6GMF8
- Pockets
- 5 · best druggability 0.85
Structure
1 distinct chain · 32% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inactive rhomboid protein 1 | protein | 857 | 32% helix, 7% strand | Q6GMF8 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1198 | 0.85 | 0.86 | 117 | empty |
| 2 | 821 | 0.70 | 0.76 | 52 | empty |
| 3 | 245 | 0.62 | 0.81 | 29 | empty |
| 4 | 73 | 0.38 | 0.78 | 14 | empty |
| 5 | 96 | 0.38 | 0.76 | 19 | empty |
Modifications
Observed in the structure: 10 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6GMF8
- Elsewhere: UniProt Q6GMF8 · AlphaFold DB Q6GMF8
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